依類型 族群 主題   
 
 
2003.06.01 ~ 2005.06.01
纖鍊病毒於東台灣原住民族群之分子流行病學與親源關係分析(Molecular epidemiology and phylogenetic analysis of TT virus (TTV) in eastern Taiwanese indigenes)
族群: 跨族群  
主題: 學術研究、醫療保健  
作者 蕭光良(Kuang-Liang Hsiao )
學校系所 國立臺灣海洋大學生物科技研究所
地點 全臺 全部  
研究內容

[ 摘要 ]

纖鍊病毒發現於1997年,是非病原性的單鍊DNA病毒,在人群中極為盛行。早期的檢測研究,多針對轉譯區中的N22片段,然而,DNA雖是纖鍊病毒的遺傳物質,其轉譯區卻有相當高的變異性,也因此嚴重低估了其盛行率,對東台灣原住民族群僅有的一篇研究也是如此。本論文的主要目的,即釐清纖鍊病毒在東台灣原住民族群中真正的盛行率,並且更進一步探討其基因型、分群以及地域特異性。

我們針對高度保守的非轉譯區,設計引子進行檢測,發現在東台灣原住民族群的盛行率高達95 %,但與各國相較則未見顯著差異。我們也發現在東台灣原住民身上,明顯有多株變體混合感染,因此擴增並選殖了包含完整轉譯區的片段加以定序,以確認各變體的基因型。

由我們的一份血清檢體中,至少可辨別出13株病毒變體,依據親緣關係分析,其中11株可細分為兩型,各自有8株與3株,且此二者獨自成為一個單系群,不屬於任何已知的分類,是纖鍊病毒的新成員。其餘兩株,則分屬纖鍊病毒既有五大群中的第一與第三群。

我們比較同一型的8株病毒變體,發現75 %以上的胺基酸突變,侷限在不到一號展讀框兩成長度的超歧異區,這暗示了纖鍊病毒可能具有準物種的特性。

[ 英文摘要 ]

Torque Teno virus (TTV), the first circular negative-stranded human DNA virus, was isolated in 1997. It has a very high prevalence among general population but without evidence of leading to any disease process. It is extremely variable and shows a wide range of tissue tropisms and persistent infection in healthy individuals.

Early studies of prevalence were mostly performed with a polymerase chain reaction (PCR) amplification of the N22 region, a fragment in open reading frame 1 (ORF 1), after the first isolated clone. However, some studies have showed that the viral detection based on this fragment strongly underestimate the prevalence of TTV. In the present study, we found 95% (133/140) prevalence in eastern Taiwanese indigenous population by using newly designed PCR primers deduced from the highly conserved untranslated region (UTR), and that is no significant difference with other countries.

Entire ORFs from one serum sample was amplified with UTR primers by inverted long PCR, and followed by cloning and sequencing. Thirteen TTV isolates were obtained. One of them belongs to group 1, one to group 3, and eleven to group 6, a new member of TTVs. Comparison of the 8 isolates belonging to group 6, 75-95% mutations on amino acid level were restricted to the hypervariable region of ORF 1, hence suggesting that TTV circulation may have a quasispecies nature.